Changes in version 1.0.0                        

Initial CRAN release.

Core prediction pipeline

  - predict_oyster() — AHP-weighted suitability scoring from tabular
    sensor data, with automatic column name matching, season detection,
    hard exclusion checks, and optional GeoTIFF + contour export for
    QGIS.
  - check_exclusions() / score_locations() — modular exclusion and
    scoring steps for programmatic use.
  - export_geotiff() / export_qml_style() — raster and QGIS colour-ramp
    export.

Species supported

Ostrea edulis, Magallana gigas, Crassostrea angulata, Ostrea stentina,
Ostrea lurida. See list_species().

Sensor ingest

  - read_nortek_adcp() — Nortek Signature 500 ADCP CSV parser.
  - read_sonar_tif() — Ping 3DSS / BioBase bathymetric raster reader.
  - merge_sensor_data() / ingest_sensors() — spatial merge of
    multi-sensor datasets.

Validation and diagnostics

  - validate_against_records() — AUC, TSS, Brier score, F1,
    sensitivity/specificity vs known presence/absence records.
  - spatial_block_cv() — spatial block cross-validation (Roberts et
    al. 2017).
  - permutation_importance() — variable importance by AUC drop.
  - sensitivity_analysis() — partial dependence curves.

Bayesian tolerance updating

  - update_species_tolerances() — MAP + Laplace or RWMH MCMC updating of
    optimal-range parameters from field observations.
  - get_tolerance_posteriors(), save_tolerance_update(),
    load_tolerance_update(), reset_tolerance_update().

Risk and disturbance modules

  - score_predation_risk(), score_hab_risk(),
    score_anthropogenic_disturbance(), score_wave_exposure(),
    score_sediment_stability(), add_shellfish_classification().

Larval connectivity

  - score_larval_connectivity() — hybrid union-find Gaussian kernel +
    optional OpenDrift/FVCOM connectivity matrix scoring.
  - parse_opendrift_connectivity() — converts OpenDrift CSV output to
    connectivity matrix format.

Multi-species and seasonal comparison

  - compare_species(), compare_surveys(), composite_seasonal().